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Migration from Magento to Shopify: costs, B2B, integrations and challenges

Learn more about pricing, B2B, integrations and challenges

Release dare:  
October 12, 2026
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Episode in Polish, English subtitles available. Below: an edited English translation of the full conversation.

Tomek Runowicz and Maciek Czerniak of wecanfly talk about migrating from Magento to Shopify Plus as it comes up in the agency's sales conversations: why more large brands are asking about it, what worries the owner, the e-commerce manager, IT and finance, how to calculate the total cost of Magento and Shopify fairly, when it's better to stay on Magento, how Shopify handles B2B and multiple markets, and when a migration pays for itself. According to Tomek, for large businesses that usually takes 6–12 months. The episode is for owners, e-commerce directors and CTOs of companies on Magento who are considering a platform change.

Key takeaways

  • Inquiries about migrating from Magento are growing, including from large, fast-moving brands. According to Tomek, the end of support for successive versions (Adobe's standard support for 2.4.6 ended on 11 August 2026; for 2.4.7 it ends on 31 May 2027 and for 2.4.8 on 31 May 2028) isn't the main reason, but a major upgrade raises the question of switching technology. The main reasons are the slow pace of store development (every new feature is a development project lasting months) and the cost of the whole Magento infrastructure, including the people who work on it. (1:16, 2:12, 3:37)
  • There are usually three people on the buying committee. The owner or board is the strongest supporter of the change, because they can see competitors pulling ahead. The e-commerce manager wants operational freedom. The IT person, often a co-author of the current solution, is the most skeptical and asks the most precise questions: what Shopify takes on and what stays with them, and how to rebuild custom processes (returns, discount codes, the loyalty program, reviews, order flow between ERP, WMS and PIM). In the Polish market there is also a cost conversation with whoever holds the budget. (7:51, 8:03, 11:03, 12:14, 19:06)
  • wecanfly brings up money first. On the Shopify side you need to count the plan (at larger scale the fee depends on revenue), apps and the extra transaction fees with third-party payment gateways; our estimates also show a worst-case scenario. Agency support is optional, because e-commerce managers and marketing run the store day to day, also with the help of Sidekick. (19:52, 20:15)
  • Free Magento Open Source isn't free. A fair comparison has to include infrastructure whose cost grows with traffic, at least one full-time technical role, an SLA (which Shopify provides on Shopify Plus), the average agency cost over the last 12 months (peak season and quiet months included) and lost benefits. Example: on Shopify a loyalty program can go live within a week on a ready-made app, while on Magento it's a project of several months, during which customers can't use it. (23:34, 24:13, 24:32, 24:50, 26:26)
  • Staying on Magento makes sense if the store handles traffic, changes ship quickly, the team is competent, the version is current and the processes are truly unique (for example extra services around the sale), especially when selling in a single market. Shopify isn't a fit when the company isn't ready for simplification, for very low-margin businesses (revenue-based fees can break the unit economics) and, as of the start of Q4 2026, for a marketplace model. An example from the conversation: several independent Shopify backends for different brands behind one storefront is doable but may require too much rebuilding. (30:40, 33:51, 37:04, 37:28)
  • The most common objections are B2B and multiple markets. Shopify Plus has a full B2B platform: individual trade agreements, accounts for customers' employees, rules down to the employee level, catalogs per branch, discounts and deferred payment terms; since 2 April 2026 native B2B is also available on lower plans, but some features remain Plus-only. Shopify Markets lets you open a new market from one admin with its own products, prices, shipping and payments, assign it a different legal entity and fulfill it from inventory in that country. The biggest risks of the migration itself are Google rankings and the continuity of processes with the systems that stay (ERP, PIM, returns, CRM); wecanfly maps them in discovery workshops. (37:38, 40:10, 41:15, 42:03)
  • One client said outright that the project paid for itself in a month, because he no longer needed four people running Magento. For large businesses Tomek puts the payback at 6–12 months, depending on how fast the store develops after launch; a new market with Shopify Markets goes live in a week or two. Before deciding, Tomek advises the whole buying committee to check three things: the full cost of running the store over the last 12 months, the projects that never happened or took much longer than planned (and what that cost in lost benefits), and the Magento version and the risk that comes with it. (45:13, 53:04)

Hosts

Tomek Runowicz and Maciek Czerniak run wecanfly, a Shopify Premier Partner agency that helps established brands with complex migrations to Shopify Plus. We move stores off Magento as part of our Magento to Shopify migration service, and you can estimate Shopify plan costs with our Shopify pricing calculator.

Read more on our blog: 7 key differences between Shopify Plus and Magento.

Discussed topics

Transcript

This transcript is based on the recording of this episode. We edited it for readability: we corrected transcription errors, punctuation, and merged sentences that were cut off mid-flow. We did not change the content, order, or meaning of anything said. Any errors or inaccuracies are our responsibility alone — not our guests'. If you spot something that needs correcting, email us.